Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs3860830 chr7:57724662 G/T 1.37E-6 371 11.92 20.58 23.37 KM Plot
CRC rs3925743 chr7:57773183 C/T 1.82E-6 371 23.6 20.47 11.92 KM Plot
CRC rs3925744 chr7:57773169 A/G 1.82E-6 371 23.6 20.47 11.92 KM Plot
CRC rs4077300 chr7:61073392 G/C 1.14E-6 370 23.83 20.27 10.27 KM Plot
CRC rs4082383 chr7:57799508 T/C 8.95E-7 366 23.3 20.7 11.92 KM Plot
CRC rs4092853 chr7:57779593 G/A 1.91E-6 371 23.37 20.58 11.92 KM Plot
CRC rs4095884 chr7:57748523 G/A 1.51E-5 373 12.6 20.27 23.83 KM Plot
CRC rs4127607 chr4:132771043 C/T 4.65E-6 366 22.25 21.8 10.6 KM Plot
CRC rs41279104 chr12:117877485 C/T 7.54E-6 365 21.67 24.67 16.03 KM Plot
CRC rs41332148 chr8:27982986 A/G 0 374 1.63 18.02 22.83 KM Plot
CRC rs4259997 chr15:67153310 A/G 3.87E-5 357 19.93 19.93 24.7 KM Plot
CRC rs4262226 chr7:62069493 C/T 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs4299949 chr7:61088744 T/C 1.17E-6 369 10.27 20.27 24.15 KM Plot
CRC rs4299950 chr7:57711139 G/A 1.79E-5 369 12.6 20.27 23.83 KM Plot
CRC rs4341117 chr7:57763611 C/T 2.73E-5 374 23.37 20.38 11.27 KM Plot